If nothing inside the home was altered you should not be getting a smell. Personally I'm confused as to why the repair person would have left the original line there and ran another one through a new hole. I would have pulled the old line up, ran the new line (in PVC) and used the same hole in the septic tank instead of creating a new one. Did he seal up the hole in the tank from the old line?
Bacteria have been shown to live in "premises plumbing systems". The latter refers to the "pipes and fixtures within a building that transport water to taps after it is delivered by the utility". Community water systems have been known for centuries to spread waterborne diseases like typhoid and cholera, however "opportunistic premises plumbing pathogens" have been recognized only more recently; Legionella pneumophila discovered in 1976, Mycobacterium avium, and Pseudomonas aeruginosa are the most commonly tracked bacteria, which people with depressed immunity can inhale or ingest and may become infected with. These opportunistic pathogens can grow for example in faucets, shower heads, water heaters and along pipe walls. Reasons that favor their growth are "high surface-to-volume ratio, intermittent stagnation, low disinfectant residual, and warming cycles". A high surface-to-volume ratio, i.e. a relatively large surface area allows the bacteria to form a biofilm, which protects them from disinfection.
If you have a major fix in your home, it’s important to shop around for a plumber to do the work. At least three bids will help you determine the range of the project, so you can weigh the pros and cons of price and the reputation of the plumbers. Get references and contact them. Also, a good plumber isn’t likely to nickel and dime you. For the smaller jobs, check out these 11 plumbing tricks.
Plumbers in Australia have licensing requirements that differ from state to state but it is generally accepted a 4-year apprenticeship with a further minimum experience of 2 years (6 years total) and a further curricular requirement as a benchmark for licensing. Licensed plumbers are also expected to maintain minimum relevant training requirements to maintain their plumbing license